PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

472119

Common Name

ARALYDRAFT_472119

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

MYB_related

Protein Properties

Length: 261aa MW: 29014.1 Da PI: 6.5085

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
472119	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.3	1.5e-12	62	103	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T eE++l+++ ++ +G++ W +Ia++++ g+t++++k +w++ 472119 62 SFTSEEEDLIIKMHAAMGSR-WQLIAQHLP-GKTEEEVKMFWNT 103 79****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.77E-13	42	112	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.245	55	109	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-17	57	109	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-13	59	107	IPR001005	SANT/Myb domain
CDD	cd00167	6.63E-10	62	105	No hit	No description
Pfam	PF00249	1.7E-11	62	103	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MVRSCSSKSK NPWANEEDTA QKFVFASASK NGSAAPKKIG LRRCGKSCRV RKTDHSGTKH 60 ESFTSEEEDL IIKMHAAMGS RWQLIAQHLP GKTEEEVKMF WNTKLKKKLS EMGIDHVTHR 120 PFSHVLAEYG NINGGGNINP NPLNQAGSLG RNHSLNDDAH QQQQPDDSGD LMFHLQAIKL 180 MTESSNQVKP ESTFVYASSS SSNSSPPLFS STCSTIAQEN LEVNFTWSDF LLEQETFHEN 240 QQSHPQELDS LFGNDFSEAA A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-12	10	109	7	108	B-MYB
1gv2_A	2e-12	10	109	4	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	6e-12	10	109	58	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	6e-12	10	109	58	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	2e-12	10	109	4	105	C-Myb DNA-Binding Domain
1msf_C	2e-12	10	109	4	105	C-Myb DNA-Binding Domain
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00148	DAP	Transfer from AT1G18960	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493466	0.0	AB493466.1 Arabidopsis thaliana At1g18960 mRNA for hypothetical protein, partial cds, clone: RAAt1g18960.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002890308.1	0.0	hypothetical protein ARALYDRAFT_472119, partial
TrEMBL	D7KH86	0.0	D7KH86_ARALL; Putative uncharacterized protein (Fragment)
STRING	fgenesh2_kg.1__2073__AT1G18960.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14822	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18960.1	1e-160	MYB_related family protein

Link Out ? help Back to Top
Phytozome	472119
Entrez Gene	9326370